NA-MIC Project Weeks

Welcome to the web page for the 34th Project Week!

The 34th NA-MIC Project Week was held virtually December 14-18, 2020.

History

Please read about our experience in running these events since 2005: Increasing the Impact of Medical Image Computing Using Community-Based Open-Access Hackathons: the NA-MIC and 3D Slicer Experience.

Logistics

• Dates: December 14-18, 2020.
• Location: THE INTERNET
• Discourse Forum: Please sign-up on the discourse forum to get updates and ask questions.
  • Project week discourse topic for less real-time conversation
• Slack: Invite Link
• REGISTRATION: Link

Agenda

Note: Zoom Rooms Open at 11am EST and Project Presentations Start at 12noon EST on MONDAY

How to add this calendar to your own?

Notes on the agenda:

• The format of this virtual event will be different from the in-person ones.
• Monday’s session will include:
  • 5-minute project presentations that include demos (for each of the projects listed below)
  • Approximately 1:45 of presentations with a 10 min break after the 10th presentation
  • An optional breakout session
• Tuesday’s session will be a discussion about
  • Features in 3D Slicer that are new since the last Project Week
  • Design considerations that are relevant for end-to-end solutions (or customizable Slicer apps).
• Wednesday’s session question and answer session about 3D Slicer for users and developers, a “live” version of what takes place asynchronously on the Slicer discourse forum. See discussed questions and answers here.
• Thursday’s session will be a discussion on recent advancing in the web and cloud technologies that are being used to create browser based visualization applications and large open databases.
• Friday’s session will be a training workshop focused on fostering partnerships with researchers and clinicians in Western Africa.
• The detailed program for each session is available from the link in the embedded Google Calendar above.
• In addition to the scheduled presentations, projects may create separate breakout sessions to work in small groups after the end of the main session
  • Presenters and participants may use the chat function during the main session to request a breakout session with the designated person
  • A few breakout sessions have already been planned (see Breakout Sessions section below)

Project Presentations for Monday (How to add a new project?)

1. SlicerSALT: Shape analysis (Beatriz Paniagua, Kitware)
2. SlicerHeart (Andras Lasso)
3. SlicerIGT and AIGT (Tamas Ungi)
4. SlicerMorph: An open and extensible platform to retrieve, visualize and analyze 3D morphology (Sara Rolfe)
5. SlicerCMF: Craniofacial image processing (David Allemang)
6. SlicerArduino (video) (Paolo Zaffino, Maria Francesca Spadea)
7. PRISM volume rendering (Simon Drouin)
8. Virtual reality (Csaba Pinter)
9. SlicerWeb and Slicer in Cloud environments (Steve Pieper, Theodore Aptekarev)
10. Napari: multi-dimensional image viewer for python (Nicholas Sofroniew)

10-minute BREAK

1. XNAT - OHIF (Dan Marcus)
2. MONAI: PyTorch-based, open-source framework for deep learning in healthcare imaging (Tina Kapur for Stephen Aylward)
3. NCI Imaging Data Commons (Andrey Fedorov,Steve Pieper, Ron Kikinis)
4. aevaSlicer volumetric mesh generation from segmentations (Sam Horvath)
5. Landmark Curves for Brain Images (Jarrett Rushmore, BWH/MGH/BU, Sylvain Bouix, BWH/HMS, Nikos Makris, BWH/MGH/HMS, Kyle Sunderland, Queen’s University, Andras Lasso, Queen’s University)
6. RadOncSegmentor Segmentation for Radiation Treatment Planning (Aditya Apte, Eve LoCastro, Harini Veeraraghavan, MSKCC)
7. Scalable Quality Assurance for Neuroimaging (SQAN) (Arvind Gopu)
8. Train the Trainers formation program with African countries: training & anatomical atlases (Juan Ruiz, Asmaa Skareb, Marilola Afonso, Nasara Cabrera Abu, Tagwa Idris, Septy Inge, Otman Aghzout, Babacar Diao, Alexandra Fernandes, Badiaa Ait Ahmed, Nayra Pumar)
9. SlicerLiverAnalysis (Rafael Palomar OUS,NTNU. Ole Vegard Solberg, SINTEF)
10. MICUDA - Generalized Entropy MI Registration (Luiz Otavio Murta, Vinicius Pavanelli Vianna)
11. TRAKO (Daniel Haehn, Steve Pieper, Lauren O’Donnell, Yogesh Rathi))
12. Slicer Training - DICOM (Sonia Pujol)
13. Slicer + Looking Glass Factory’s Holographic Display (Jean-Christophe Fillion-Robin, Stephen Aylward)
14. Open Anatomy (Mike Halle et. al.)

Breakout Sessions:

To learn how to join, leave or display list of breakout rooms. See here.

1. Monday @ 3pm Ultrasound Image Guided Therapy (Tamas Ungi, Tina Kapur, Simon Drouin)
2. Tuesday @ 11am Collaborative VR discussion (Csaba Pinter and Simon Drouin)
3. Wednesday @ 11am EST Project/Room 10 & 11: Dan Marcus, XNAT + OHIF
4. Wednesday @ 11am: Project 15 Landmark Curves for Brain Images  (Jarrett Rushmore, Kyle Sunderland)
5. Wednesday @ 2pm. Project 12 MONAI: PyTorch-based, open-source framework for deep learning in healthcare imaging (Stephen Aylward)
6. Thursday @ 11am. Segmentation import/export/storage (Andras Lasso)
7. Thursday @ 2pm Image segmentation clinicBring your own segmentation problem or learn from how we solve others’(Andras Lasso)

Registrants

Do not add your name to this list below. It is maintained by the organizers based on your registration. Register here.

List of registered participants so far (names will be added here after processing registrations):

1. Simon Drouin , École de technologie supérieure (ETS Montreal) , QC , Canada
2. Tina Kapur , Brigham and Women’s Hospital and Harvard Medical School , MA , USA
3. Nadya Shusharina , Massachusetts General Hospital , MA , USA
4. Salim Kanoun , Institut Claudius Regaud - Toulouse , Occitanie , France
5. Hans Johnson , University of Iowa , IA , USA
6. Steve Pieper , Isomics, Inc. , Massachusetts , USA
7. Csaba Pintér , Ebatinca S.L., Pixel Medical Inc. , Las Palmas , Spain
8. Saima Safdar , University of western australia , WA , Australia
9. Alexandra Golby , Brigham and Women’s hospital and Harvard Medical School , MA , USA
10. Randy Gollub , MGH , MA , USA
11. Simon Oxenford , Charité – Universitätsmedizin Berlin , Berlin , Germany
12. Sonia Pujol , Brigham and Women’s Hospital, Harvard Medical School , MA , USA
13. Sylvain Bouic , Brigham and Women’s Hospital , MA , USA
14. Khalid Al Orabi , King abdullah medical city , Makkah , Saudi Arabia
15. Andrey Fedorov , Brigham and Women’s Hospital , MA , USA
16. Farah Alkhatib , University of Western Australia , Western Australia , Australia
17. Dhruv Kool Rajamani , Worcester Polytechnic Institute , Massachusetts , USA
18. Adam Wittek , Intelligent Systems for Medicine Laboratory, The University of Western Australia , Western Australia , Australia
19. Matthew Toews , École de Technologie Supérieure , QC , Canada
20. Vivian Monezi Tetzner , USP-FFCLRP , SP , Brazil
21. Samantha Horvath , Kitware , North Carolina , USA
22. Rafael Palomar , Oslo University Hospital , Norway , Norway
23. Paolo Zaffino , Magna Graecia University of Catanzaro , Catanzaro , Italy
24. Michael Young , Indiana University , IN , USA
25. Arvind Gopu , Indiana University , Indiana , USA
26. Attila Nagy , University of Szeged , N/A , Hungary
27. Curtis Lisle , KnowledgeVis, LLC , FL , USA
28. Vinicius Pavanelli Vianna , USP - University of Sao Paulo , Sao Paulo , Brazil
29. NIKOLAOS MAKRIS , MASSACHUSETTS GENERAL HOSPITAL , MASSACHUSETTS , USA
30. Tamas Ungi , Queen’s University , Ontario , Canada
31. Eve LoCastro , Memorial Sloan Kettering Cancer Center , New York , USA
32. Ole Vegard Solberg , SINTEF , Trøndelag , Norway
33. Mehran Azimbagirad , University of Sao Paulo , SP , Brazil
34. Sara Rolfe , University of Washington , WA , USA
35. Junichi Tokuda , Brigham and Women’s Hospital , MA , USA
36. Harini Veeraraghavan , Memorial Sloan Kettering Cancer Center , New York , USA
37. Renzo Phellan Aro , McGill University , QC , Canada
38. Beatriz Paniagua , Kitware Inc , NC , USA
39. Theodore Aptekarev , - , - , Russia/Israel
40. Eleni Siampli , Childrens National Medical Center , DC , USA
41. Ron Kikinis , Harvard Medical School , Massachusetts , USA
42. Carl-Fredrik Westin , Harvard Medical School , MA , USA
43. Lauren J ODonnell , BWH , MA , USA
44. Raul San Jose , Brigham and Women’s Hospital , MA , USA
45. Julien Finet , Kitware , Rhône-Alpes , France
46. David Allemang , Kitware Inc , NC , USA
47. Forrest Li , Kitware, Inc. , NC , USA
48. Matt McCormick , Kitware , North Carolina , USA
49. Sarah Frisken , Brigham and Women’s Hospital , MA , USA
50. Jean-Christophe Fillion-Robin , Kitware , North Carolina , USA
51. Nick Jowkar , Brigham and Women’s Hospital , MA , USA
52. Luiz Murta , University of São Paulo , SP , Brazil
53. Murat Maga , Seattle Children’s Research Institute / University of Washington , Washington , USA
54. Marco Nolden , German Cancer Research Center (DKFZ) , N/A , Germany
55. Nayra Pumar Carreras , Universidad de Las Palmas de Gran Canaria , Las Palmas , Spain
56. khalid Elamin Awad , University of Khartoum, Faculty of Medicine , Khartoum , Sudan
57. Marie Ndiaye , Université Assane Seck de Ziguinchor , Sénégal , Sénégal
58. Gregory C. Sharp , Massachusetts General Hospital , MA , USA
59. David García-Mato , Universidad Carlos III de Madrid , Madrid , Spain
60. Samba NDIAYE , CHEIKH ANTA DIOP UNIVERSITY , SENEGAL , Sénégal
61. Ahmed Temtam , Old Dominion University , VA , USA
62. Jared Vicory , Kitware , North Carolina , USA
63. Daniel Haehn , University of Massachusetts Boston , Massachusetts , USA
64. Jarrett Rushmore , Boston University, Brigham and Women’s Hospital, MGH , MA , USA
65. Tagwa Idris , Massachusetts General Hospital , MA , USA
66. Fathelrahman Idris Gasmelseed Ali , University of Khartoum, Faculty of medicine , Khartoum , Sudan
67. EL Tahir Ahmed EL Tahir , University of Alfashir , North Darfur , Sudan
68. Abdelmajed Manna , Department of Anatomy, university of Alfashir , North Darfur , Sudan
69. Noureldeen abaker , Uorolgy resident , South Darfur , Sudan
70. Mahil Mohamed Sharief Abdalla , Department of Anatomy, Faculty of Medicine, University of Khartoum , Khartoum , Sudan
71. Haythem Mohammed Gorshi Ahmed , University of Khartoum , Khartoum , Sudan
72. Abuzar Mubarak Omer Osman , Ondokuz mayıs üniversity OMÜ , black sea , Turkey
73. Ehab Mohammed Rabie Abd Allah , Cairo University school of medicine , Khartoum , Sudan
74. Nicholas Sofroniew , Chan Zuckerberg Initiative , CA , USA
75. Osama Mohammed Ahmed Mohammed ELNOUR , Faculty of medicine and health scince , North Darfur State , Sudan
76. Mustafa Bahar , Soba University Hospital , Khartoum , Sudan
77. Dr.anatomy83@yahoo.com , Prince Sattam bin Abdulaziz University , Riyadh , Saudi Arabia
78. Abubaker Elssidig Elhaj Bakhit Farg , University of Ha’il. KSA , Ha’il Prevalence , Saudi Arabia
79. Pape Mady THIAO , École militaire de santé de Dakar , SÉNÉGAL , Sénégal
80. Elsadig Suleiman Adam , Nyala Specialized Hospital , South Darfur , Sudan
81. Juan Ruiz-Alzola , University of Las Palmas de Gran Canaria , Canarias , Spain
82. Idafen Santana , Las Palmas de Gran Canaria University , Canary Islands , Spain
83. NORALDAIM AHMED FADOL MOHAMMED , Ministry of health , Darfor , Sudan
84. Leila omer adam Ahmed , University of al fashir , North Darfur , Sudan
85. Babacar DIAO , Cheikh Anta DIOP University , Senegal , Sénégal
86. Khaly / TALL , Ecole Supérieure Polytechnique de Dakar , Sénégal , Sénégal
87. Idy , École Supérieure Polytechnique , Senegal , Sénégal
88. Stephen Aylward , Kitware , NC , USA
89. Selly Suzuki , São Leopoldo Mandic , Sao Paulo , Brazil
90. Haythem Guermazi , Faculté de Médecine de L’université de Nouakchott Al Aasriya Mauritania , Nouakchott , Mauritania
91. William Wells , BWH , Massachusetts , USA
92. Christian Herz , Children’s Hospital of Philadelphia , Pennsylvania , USA
93. Mamadou Samba CAMARA , Ecole Supérieure Polytechnique / University of Dakar , Senegal , Sénégal
94. Michal Brzus , University of Iowa , IA , USA
95. Wafa Nour , Khartoum breast care center , Khartoum , Sudan
96. Izabel Rubira-Bullen , University Sao Paulo , Sao Paulo , Brazil
97. Tim Olsen , Radiologics , IL , USA
98. Blake Griggs , Radiologics, Inc , CA , USA
99. Amadou Gabriel Ciss , université cheikh anta diop , senegal , Sénégal
100. Idris Ahmed Abaker Ibrahim , Alfasher University faculty of medicine , NORTH DARFUR , Sudan
101. SOW NDEYE FATOU , UCAD , DAKAR , Sénégal
102. Souleymane Diatta , chu fann , dakar , Sénégal
103. Momar Sokhna Diop , Cheikh Anta Diop University , Senegal , Sénégal
104. Dan Marcus , Washington Universituy , MO , USA
105. PAPA SALMANE BA , UCAD , Sénégal , Sénégal
106. armin , medken , wa , USA
107. Salah osman salah , Rick , Khartoum , Sudan
108. Aya Zakareya Noor Hamid , Haj Al Safi Hospital , Khartoum , Sudan
109. Shiraz Yousif , University of khartoum , NSW , Australia
110. Assane Ndiaye , Université Assane Seck , Senegal , Sénégal
111. Kamal Eldeen Mohammed Ibrahim Dahab , University of Khartoum , Khartoum , Sudan
112. Asmaa Skareb , Canary Islands Institute of Technology , Gran Canaria , Spain
113. Manjula , Malmö University , Skane , Sweden
114. Michela Destito , Magna Graecia University of Catanzaro , Italy , Italy
115. Souleymane Diao , Université Cheikh Anta Diop , Sénégal , Sénégal
116. Geir Arne Tangen , SINTEF , Trondheim , Norway
117. Mohammed Nimir , University Hospital Coventry and Warwickshire , West Midlands , UK
118. Marwan Ahmed , St. George’s University , Saint George’s , Grenada
119. Elimam Elghazali Siddig Mohamed Mustafa , University of Khartoum , Khartoum , Sudan
120. Badiaa AIT AHMED , University Abdelmalek Essaâdi , North Africa , Morocco
121. Rabab SEDRATI , ABDELMALEK ESAADI UNIVERSITY , North of Africa , Morocco
122. Ahmedou Moulaye IDRISS , Faculty of Medicine University of Nouakchott Al Aasriya , Mauritania , Mauritania
123. Mohamed bamba hbedy , Faculté médecine Nouakchott , Nouakchott , Mauritania
124. EL FARAZE Mohammed , ABDELMALEK ESAADI UNIVERSITY , NORTH OF AFRICA , Morocco
125. Kyle Sunderland , Queen’s University , Ontario , Canada
126. EL GUERI Jaouad , ENSA Tétouan , North of Africa , Morocco
127. Otman AGHZOUT , University Abdelmalek Essaedi , North Africa , Morocco
128. Andras Lasso , PerkLab, Queen’s University , ON , Canada
129. Pedro Moreira , Brigham and Women’s Hospital , MA , USA
130. Dr. Gargi Jani , National forensic sciences university , Gujarat , India
131. Anita Carolina Ribeiro , FOUSP , São Paulo , Brazil
132. Daniele Piccolo , Nucleode SRL, University of Padua , UD , Italy
133. David Manso Arcediano , Cella Medical Solutions , Murcia , Spain
134. Mohamed aly Dedew , Faculty of medecine of Nouakchott , Nouakchott , Mauritania
135. Miguel Xochicale , King’s College London , London , UK
136. Mahomed Sidique Abdul Cadar Dada , Uem , Maputo , Moçambique
137. Tasos Raptis , National Technical University of Athens , Attiki , Greece
138. María Dolores Afonso Suárez , Universidad de Las Palmas de Gran Canaria , Canary Islands , Spain
139. Simon Doran , Institute of Cancer Research , Surrey , UK
140. Elameen Adam , University of Bahri , Khartoum , Sudan
141. Fatima Elnagieb Adam Gamereldien , Nyala Teaching hospital , South Darfour , Sudan
142. Rafael Pineda Reyes , University of Cordoba , Cordoba , Spain
143. Blanca Zufiria Gerbolés , Vicomtech , guipuzkoa , Spain
144. Mohammed Eltahir , University of Bahri , Khartoum , Sudan
145. Godwin Wunpiini Yiddi , Kwame Nkrumah University of Science and Technology , Ashanti Region , Ghana
146. Kate Alpert , Radiologics , CO , USA
147. Gordon Harris , Massachusetts General Hospital , MA , USA
148. Supriya Somarouthu , Massachusetts General Hospital , Massachusetts , USA
149. Awa NDIAYE SY , Université Cheikh Anta Diop de Dakar - Faculté de Médecine, de Pharmacie et d’Odontologie , SENEGAL , Sénégal
150. Aditya Apte , Memorial Sloan Kettering Cancer Center , New York , USA
151. Andrea Avena-Koenigsberger , Indiana University , INDIANA , USA
152. Juan Carlos Prieto , UNC , North Carolina , USA
153. Michael Halle , Brigham and Women’s Hospital , Massachusetts , USA
154. Marta Vidal-Garcia , University of Calgary , Alberta , Canada
155. antonietta del bove , UNIVERSITAT ROVIRA I VIRGILI , SPAIN , Spain
156. Terrie Simmons-Ehrhardt , Virginia Commonwealth University , VA , USA
157. Arthur Porto , Louisiana state university , LA , USA
158. Lucia Cevidanes , University of Michigan , MI , USA
159. Lucas Lo Vercio , University of Calgary , Alberta , Canada
160. Roozbeh Shams , Polytechnique Montreal , QC , Canada
161. Eva Zaffarini , University of Calgary , Alberta , Canada
162. James Dickson , Radiologics Inc , Pennsylvania , USA
163. Erik Ziegler , Radical Imaging , Rhone-Alpes , France
164. Mounia Chakkour , Abdelmalek Essaâdi University (ENSA Tetuan) , North Africa , Morocco
165. Étienne Léger , Concordia University , Québec , Canada
166. Benedict Kingsford Andam , Kwame Nkrumah University of Science and Technology , Ayeduase , Ghana
167. Mohammad Alsad , Imperial College London , Cambs , UK
168. YAHYA TFEIL , faculty of medicine alassriya university mauritaniaania , nouakchott , Mauritania
169. jonas bianchi , University of the Pacific , California , USA
170. MOHAMED SABAN , UNIVERSIDAD DE VALENCIA , VALENCIA , Spain
171. Amdaouch Ibtisam , University of Abdelmalek Essaadi , Tanger-Tetouan , Morocco
172. Mariela Peralta-Mamani , Bauru School of Dentistry-University of Sao Paulo , SP , Brazil
173. Ángel Terrero Pérez , Bauru School of Dentistry, University of Sao Paulo , Sao Paulo , Brazil
174. David Orlando Grajales Lopera , Polytechnique Montreal , Québec , Canada
175. Alexis Girault , Kitware , NC , USA
176. Leonardo F Machado , University of São Paulo até Ribeirão Preto , SP , Brazil
177. Manuel Gustavo Chávez Sevillano , Rio de Janeiro State University , Rio de Janeiro , Brazil
178. Gabor Fichtinger , Queen’s Univ , ON , Canada
179. Charles Johnson , University of Iowa , Iowa , USA
180. Morgan Hough , Center17 , CA , USA
181. Aron Aliaga Del Castillo , Bauru Dental School, University of São Paulo , São Paulo , Brazil
182. Camila Massaro , University of São Paulo , Sp , Brazil
183. Wilson Komla , Kwame Nkrumah University of Science and Technology , Ashanti Region , Ghana
184. Victor Elikem Akpaloo , Kwame Nkrumah University of Science and Technology , Greater Accra Region , Ghana
185. ABOAGYE, Gifty Takyiwaa , Kwame Nkrumah University of Science and Technology , Ashanti , Ghana
186. omar sow , université assane seck de ziguinchor , ziguinchor , senegal
187. Rudolf Bumm , Department of Surgery, Kantonsspital Graubünden , Graubünden , Switzerland
188. Kelly Diamond , Seattle Children’s Research Institute , WA , United States
189. Autumn Kulaga , CCDC Data & Analysis Center , MD , US
190. DELEAT-BESSON , University of Michigan , Michigan , United States
191. Celia LE , University of Michigan , Michigan , United States
192. Deise Caldas , Malta , Saint Julians , Malta
193. Steve Moore , Washington University , MO , USA
194. Cseh Martin , University of Szeged 3D Center , Csongrad , Hungary
195. Nasara Cabrera Abu , Canary Islands Government , Canary Islands , Spain
196. Sokhna Astou Gawane Thiam , Université Cheikh Anta Diop , Sénégal , Sénégal
197. Jasmin Metzger , German Cancer Research Center , BW , Germany
198. Aron Helser , Kitware , NC , US
199. Marcela Gurgel , Federal University of Ceara , Ceara , Brazil
200. Jason Haider , Xenco Medical , California , United States
201. Jordan Karten , Massachusetts General Hospital , MA , USA
202. Ron Alkalay , Beth Israel Deaconess Medical Center , MA , US
203. Parikshit Juvekar , Brigham & Women’s Hospital , Massachusetts , USA
204. Dhiego Bastos , BWH , MA , United States

Statistics

• 204 registered attendees
• 26 countries
• 101 institutions (82 academic, 18 industry, and 1 goverment)