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NA-MIC Project Weeks

Welcome to the web page for the 41st Project Week!

This event will take place June 24th - June 28th, 2024 at MIT, Cambridge, MA. Project Week 41 will be a hybrid event with a strong in-person component. More details will be posted on this page as the event approaches. If you have any questions, you can contact the organizers.

Preparation meetings

We held weekly preparation meetings at 10am on Tuesdays on Zoom, starting April 30, 2024. The links will be sent by email.

Registration

Register at the link here.

Discord

The Discord application is used to communicate between team members and organize activities before and during Project Week. Please join the Project Week Discord server as soon as possible and explore its functionality before the workshop. For more information on the use of Discord before and during Project Week, please visit this page.

Agenda

How to add this calendar to your own?

Breakout sessions

Projects

To learn how to create or update project pages, please refer to the contributing project pages section.

The PW41_2024_MIT event has a total of 46 projects.

DICOM

  1. dcm2parquet (In-person) (Vamsi Thiriveedhi, Andrey Fedorov, Steve Pieper)

VR/AR and Rendering

  1. Visual Model for Respiratory Motion of Airways with SOFA-Slicer (In-person) (Quinn Williams, Steve Pieper)

IGT and Training

  1. Integration of Slicer and ROS (In-person) (Junichi Tokuda, Anton Deguet, Steve Pieper, Mariana Bernardes, Laura Connolly, Simon Leonard)

  2. AI-based ultrasound imaging simulator (In-person) (Junichi Tokuda, Xihan Ma, Simon Leonard, Laura Connolly, Haichong)

  3. Virtual plate placement for orbital surgery (In-person) (Chi Zhang, Braedon Gunn, Andrew Read-Fuller)

  4. NousNav Video Tutorial (in person) (Sonia Pujol, Colin Galvin)

  5. An IGT Masters course based on Slicer (In-person) (Simon Drouin, Rafael Palomar)

Segmentation / Classification / Landmarking

  1. BAMF nnUNet MRI Breast Model (Online) (Rahul Soni, Jithendra Kumar, Jeff Van Oss, Gowtham Murugesan)

  2. New Radiology and Pathology Deep Learning Models into MHub.ai (In-person) (Curtis Lisle, Leonard Nürnberg)

  3. VolumeAXI - Volume Analysis, Explanability and Interpretability on CBCT (In-person) (Jeanne Claret, Gaëlle Leroux, Lucia Cevidanes, Claudia Mattos, Juan Prieto)

  4. Segmentation verification module for finalizing multi-label AI segmentations (Online) (Csaba Pintér, Andrés Díaz Pinto, Dániel Palkovics)

  5. OMAS CT: Open Model for Anatomy Segmentation in Computer Tomography (In-person) (Tamaz Amiranashvili, Murong Xu, Bjoern Menze)

  6. Manual editing of FreeSurfer cortical surfaces (In-person) (Benoît Verreman, Jarrett Rushmore, Sylvain Bouix)

  7. Visual Evaluation and 3D Inspection of Cortical Surface Reconstructions from MRI Using 3D Slicer (Online) (Kaveh Moradkhani, Sylvain Bouix, Jarrett Rushmore)

  8. Importing Labelled Sulci from Morphologist Pipeline (Brainvisa). Creating a new 3D Slicer terminologie (In-person) (Sara Fernandez Vidal, Valerio Frazzini)

  9. Automatic classification of MR scan sequence type (In-person) (Deepa Krishnaswamy, Cosmin Ciausu, Megha Kalia, Andrey Fedorov)

  10. Evaluation of subcortical segmentation results of Unest Model and creating a slicer module (Online) (Ghazal Danaee, Sylvain Bouix, Jarrett Rushmore)

  11. Integrate CPU friendly auto segmentation and CT utility models into mhub (In-person) (Suraj Pai, Leonard Nürnberg, Andriy Fedorov, Hugo Aerts)

  12. Evaluation of AI methods for MRI segmentation on IDC data (In-person) (Cosmin Ciausu, Deepa Krishnaswamy, Megha Kalia, Andrey Fedorov)

  13. Ultrasound extension (In-person) (Tamas Ungi, Tina Kapur, Amene Asgari, Mike Jin)

  14. Integrating ITMT Model into MHub.ai Platform (In-person) (Reza Mojahed-Yazdi)

  15. Slicer extension for shape analysis for dental applications using ShapeAXI module (In-person) (Lucie Dole, Florian Davaux, Claudia Trindade Mattos, Selene Barone, Felicia Miranda, Marcela Lima Gurgel, Juan Carlos Prieto, Lucia Cevidanes)

  16. Computer assisted vessel segmentation for 2D angiography (In-person) (Sarah Frisken)

  17. Integrate MRSegmentator and DeepSpA models into mhub.ai (In-person) (Felix Dorfner, Hartmut Häntze, Keno Bressem)

  18. Grid-based Semi-Landmarking via Surface Markups (In-person) (Sara Rolfe, Murat Maga)

Quantification and Computation

  1. Spinal musculoskeletal module for computing vertebral-specific loading in daily tasks (In-person) (Ron Alkalay, Dennis Anderson, Vy Hong, Steve Pieper, Csaba Pinter)

  2. Multimodal Registration MR2CBCT (In-person) (Leroux Gaelle, Claret Jeanne, Cevidanes Lucia, Allemang David, Prieto Juan Carlos)

  3. Slicer Plugin for Detection of Motion Artifact on T1w MRI (In-person) (Charles Bricout, Sylvain Bouix, Owen Borders)

  4. Susceptibility distortion correction in diffusion MRI dataset (Online) (Sedigheh Dargahi, Sylvain Bouix)

  5. Using statistical shape modeling for improving 3D reconstruction of fetal ultrasound images (In-person) (Chi Zhang, Emet Schneiderman, Preetam Schramm, Zohre German, Ju-Ying Lin)

  6. T1w MRI Artifact Removal (In-person) (Owen Borders, Sylvain Bouix, Charles Bricout)

  7. Quality Control Model for Brain Surfaces (In-person) (Florian Davaux, Juan Carlos Prieto, Lucie Dole, Martin Styner)

  8. Finite element model preprocessing module for computing vertebral failure (In-person) (Ron Alkalay, Zahra Soltani, Steve Pieper, Csaba Pinter, Gnaneswar Chundi,)

Cloud / Web

  1. NCI Imaging Data Commons - user support and platform development (In-person) (Andrey Fedorov, Deepa Krishnaswamy, Vamsi Thiriveedhi, Cosmin Ciausu, Leonard Nuerenberg, Suraj Pai, Steve Pieper, Ron Kikinis, Michael Onken)

  2. Implement support of external DICOM servers in Kaapana (In-person) (Vamsi Thiriveedhi, Mikulas Bankovic, Andrey Fedorov)

Infrastructure

  1. MHub Contributors (In-person) (Leonard Nürnberg, Andriy Fedorov, Hugo Aerts)

  2. MorphoDepot: Collaborative segmentation projects (In-person) (Steve Pieper, Murat Maga)

  3. Enabling PyTorch3D on Windows and Optimizing Miniconda for Slicer Extensions (In-person) (Leroux Gaelle, Claret Jeanne, Cevidanes Lucia, Hutin Nathan, Allemand David, Prieto Juan Carlos)

  4. 3DSlicerForLatinAmerica (Online) (Sonia Pujol, Luiz Murta, Douglas Samuel Gonçalves, Lucas Sanchez Silva, Paulo Eduardo de Barros Veiga, Adriana Herlinda Vilchis González, Enrique Hernández Laredo, Victor Manuel Montaño Serrano, Monserrat Ríos-Hernández, Juan Carlos Avila Vilchis, Vianney Muñoz Jiménez, Mariana Alvarez-Carvajal, Valeria Gómez Valdes)

  5. Updated Icons and Theme switching (In-person) (Sam Horvath, Wendy Plesniak)

  6. Simple Editor for Python Scripting (Online) (Oshane Thomas, Murat Maga, Steve Pieper, Sara Rolfe)

  7. Risk Prediction Deep Learning Models into MHub.ai (In-person) (Ahmed Adly, Leonard Nuernberg, Hugo Aerts)

  8. Slicer-SOFA (In-person) (Rafael Palomar, Paul Baksic, Steve Pieper, Andras Lasso, Jean-Christophe Fillion-Robin, Sam Horvath, Naomi Catwell, Chi Zhang, Ron Alkalay, Quinn Williams)

  9. 3D Slicer Internationalization (In-person and Online) (Sonia Pujol, Mamadou Samba Camara, Mouhamed DIOP, Fatou Bintou Ndiaye)

  10. Enhancing the SlicerMorph Hi-Res Screen Capture Module for 3D Slicer (Online) (Oshane Thomas, Murat Maga)

Other

  1. epiSTIM as 3d slicer extension (Online) (Carole-Anne COS, Martin GREGORIO, Sara FERNANDEZ VIDAL)

Uncategorized

This section lists projects that either have no category assigned, are assigned to the “Uncategorized” category, or are assigned to a different category than the ones listed above. If you are unable to find a category that is suitable for your project, or believe that a specific category is missing, please discuss it with the organizers.

Registrants

Do not add your name to this list below. It is maintained by the organizers based on your registration.

List of registered participants so far (names will be added here after processing registrations):

Updated on 2024-06-22.

  1. Ekaterina Akhmad, Maastricht University, Netherlands, Virtual
  2. Ron Alkalay, Beth Israel Deaconess Medical Center, USA, In Person
  3. Tamaz Amiranashvili, University of Zurich, Switzerland, In Person
  4. Dennis Anderson, Beth Israel Deaconess Medical Center, USA, In Person
  5. Theodore Aptekarev, Slicer Community, Montenegro, Virtual
  6. Amene Asgari, Brigham and women’s hospital, USA, In Person
  7. Paul Baksic, INRIA - France, France, Virtual
  8. Mikulas Bankovic, German Cancer Research Center, Germany, Virtual
  9. Imre János Barabás, Semmelweis University, Hungary, In Person
  10. Owen Borders, Massachusetts General Hospital, USA, In Person
  11. Sylvain Bouix, École de technologie supérieure, Canada, In Person
  12. Charles Bricout, ETS, Canada, In Person
  13. Mamadou Samba CAMARA, Université Cheikh Anta Diop de Dakar, Senegal, Virtual
  14. Naomi Catwell, ÉTS, Canada, Virtual
  15. Mirela Cazzolato, University of Sao Paulo, Brazil, Virtual
  16. Lucia Cevidanes, University of Michigan, USA, Virtual
  17. Gnaneswar Chundi, Rutgers University, USA, In Person
  18. Cosmin Ciausu, Brigham and Women’s Hospital, USA, In Person
  19. Jeanne Claret, University of Michigan, USA, In Person
  20. David Clunie, PixelMed, USA, Virtual
  21. Carole-Anne COS, Paris Brain Institute, France, Virtual
  22. Mariana Costa Bernardes Matias, Brigham and Women’s Hospital, USA, In Person
  23. Ghazal Danaee, École de technologie supérieure( ÉTS), Canada, Virtual
  24. sedigheh dargahi, École de technologie supérieure, Canada, Virtual
  25. Florian Davaux, Unaffiliated, , In Person
  26. Paulo Eduardo de Barros Veiga, Universidade de São Paulo, Brazil, Virtual
  27. Anton Deguet, Johns Hopkins University, USA, In Person
  28. Chayanika Devi, University of Cincinnati, USA, Virtual
  29. Mouhamed DIOP, Cheikh Anta Diop University of Dakar, Senegal, Virtual
  30. Lucie Dole, Unaffiliated, , In Person
  31. Reuben Dorent, Brigham and Women’s Hospital, USA, In Person
  32. Felix Dorfner, Massachusetts General Hospital and Charité - Universitätsmedizin Berlin, USA, In Person
  33. Simon Drouin, École de technologie supérieure, Canada, In Person
  34. Moumen El-Melegy, Assiut University, Brigham and Women’s Hospital, USA, In Person
  35. Andrey Fedorov, Brigham and Women’s Hospital, USA, In Person
  36. sara Fernandez Vidal, PARIS BRAIN INSTITUTE, France, In Person
  37. Jean-Christophe Fillion-Robin, Kitware, USA, In Person
  38. Sarah Frisken, Brigham and Women’s Hospital, USA, In Person
  39. Colin Galvin, Brigham and Women’s Hospital, USA, In Person
  40. Douglas Samuel Gonçalves, USP, Brazil, Virtual
  41. Martin Gregorio, ICM, France, Virtual
  42. Michael Halle, Open Anatomy Project, USA, In Person
  43. Ahmed Hassan, Harvard Medical School, Netherlands, In Person
  44. Carl Haugg, Harvard Medical School, USA, In Person
  45. Enrique Hernandez-Laredo, Universidad Autónoma del Estado de México, Mexico, Virtual
  46. Vy Hong, Technical University of Munich, Germany, In Person
  47. Samantha Horvath, Kitware Inc, USA, In Person
  48. Bing-Xing Huo, Broad Institute, USA, Virtual
  49. Mike Jin, Brigham and Women’s Hospital; Centaur Labs, USA, In Person
  50. JANGRAE JO, University of Massachusetts, USA, Virtual
  51. Megha Kalia, Brigham and Womens, USA, In Person
  52. Tina Kapur, Brigham and Women’s Hospital, Harvard Medical School, USA, In Person
  53. Ron Kikinis, Brigham and Women’s Hospital, Harvard Medical School, USA, In Person
  54. Deepa Krishnaswamy, Brigham and Women’s Hospital, USA, In Person
  55. Andras Lasso, Queen’s University, Canada, In Person
  56. kyuheon lee, korea university, Republic of Korea, Virtual
  57. Gaelle Leroux, University of Michigan, USA, In Person
  58. Rui Li, New York University, USA, Virtual
  59. Curtis Lisle, KnowledgeVis, LLC, USA, In Person
  60. Xihan Ma, Worcester Polytechnic Institute, USA, In Person
  61. Murat Maga, Seattle Childrens Research Institute, USA, Virtual
  62. Katie Mastrogiacomo, Brigham and Women’s Hospital, USA, In Person
  63. Moaid Mohamedosman, Unaffiliated, Egypt, Virtual
  64. Reza Mojahed-Yazdi, AIM Lab, Brigham and Women Hospital, USA, In Person
  65. Victor Manuel Montaño Serrano, Universidad Autónoma del Estado de México, Mexico, Virtual
  66. Kaveh Moradkhani, École de technologie supérieure ÉTS, Canada, Virtual
  67. Luiz Murta, University of São Paulo, Brazil, Virtual
  68. Leonard Nürnberg, MGB / Harvard, Netherlands, In Person
  69. Ballambat Suraj Pai, Brigham and Womens Hospital, USA, In Person
  70. Rafael Palomar, Oslo University Hospital, Norway, In Person
  71. Umang Pandey, Clinica Universidad de Navarra, Madrid, Spain, Virtual
  72. Tae Young Park, KIST, Republic of Korea, Virtual
  73. Sam Pathak, NCI, USA, Virtual
  74. Steve Pieper, Isomics, Inc., USA, In Person
  75. Csaba Pinter, EBATINCA, Spain, Virtual
  76. Juan Prieto, University of North Carolina, USA, In Person
  77. Sonia Pujol, Brigham and Women’s Hospital, Harvard Medical School, USA, In Person
  78. Aneesh Rangnekar, Memorial Sloan Kettering Cancer Center, USA, Virtual
  79. Monserrat Ríos-Hernández, Universidad Autónoma del Estado de México, Mexico, Virtual
  80. Sara Rolfe, Seattle Children’s Research Institute, USA, In Person
  81. Jarrett Rushmore, Boston University School of Medicine, USA, In Person
  82. Divya Sain, Velsera, USA, Virtual
  83. Lucas Sanchez Silva, Universidade de São Paulo, Brazil, Virtual
  84. Leonardo Seoane, Ochsner Health System, USA, In Person
  85. Zahra Soltani, Beth Israel Deaconess Medical Center, USA, Virtual
  86. Kyle Sunderland, Queen’s University, Canada, In Person
  87. Baye Balla SY, Military Health School of Dakar, Senegal, Virtual
  88. Attila Tanács, University of Szeged, Hungary, Virtual
  89. Jess Tate, University of Utah, USA, Virtual
  90. Pape mady Thiao, EMS, Senegal, Virtual
  91. Pape mady Thiao, Unaffiliated, , Virtual
  92. Vamsi Thiriveedhi, Brigham and Women’s Hospital, USA, In Person
  93. Oshane Thomas, Seattle Children’s Research Institute, USA, Virtual
  94. Junichi Tokuda, Brigham and Women’s Hospital, USA, In Person
  95. Tamas Ungi, Queen’s University, Canada, In Person
  96. Jeff VanOss, BAMF Health, USA, Virtual
  97. Benoit Verreman, ÉTS, Canada, In Person
  98. Adriana H. Vilchis González, Facultad de Ingeniería- Facultad de Medicina _UAEMéx, Mexico, Virtual
  99. William Wells, BWH, USA, In Person
  100. Quinn Williams, Brigham and Women’s Hospital, USA, In Person
  101. Murong Xu, Univerisity of Zurich, Switzerland, In Person
  102. Chi Zhang, Texas A&M University School of Dentistry, USA, In Person

Statistics

Organizers

History

Please read about our experience in running these events since 2005: Increasing the Impact of Medical Image Computing Using Community-Based Open-Access Hackathons: the NA-MIC and 3D Slicer Experience.